Package: freecontact Source: freecontact (1.0.21-7) Version: 1.0.21-7+b1 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1618 Depends: libboost-program-options1.67.0, libc6 (>= 2.14), libfreecontact0v5, libgcc1 (>= 1:3.0), libgomp1 (>= 4.2.1), libstdc++6 (>= 5.2), libxerces-c3.2, perl:any Suggests: bash-completion, hhsuite, hmmer Section: science Priority: optional Homepage: http://rostlab.org/ Description: fast protein contact predictor FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011). . FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible. . A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input. . jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example. . This package contains the command line tool freecontact(1).